Scientific papers & research index
25 selected scientific papers with matched article links. A paper can be relevant to more than one system.
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25 papers
Bartels-Rausch, Thorsten; Bergeron, Vance; Cartwright, Julyan H. E.; Escribano, Rafael; Finney, John L.; Grothe, Hinrich; Gutiérrez, Pedro J.; Haapala, Jari; Kuhs, Werner F.; Pettersson, Jan B. C.; Price, Stephen D.; Sainz-Díaz, C. Ignacio; Stokes, Debbie J.; Strazzulla, Giovanni; Thomson, Erik S.; Trinks, Hauke; Uras-Aytemiz, Nevin (2012). Ice structures, patterns, and processes: A view across the icefields Reviews of Modern Physics, 84, 885-944.
Bechtel, Maximilian; Kurrle, Nathalie J.; Trapp, Oliver (2024). A Prebiotic Pathway to Nicotinamide Adenine Dinucleotide Chemistry – A European Journal, 30, e202402055.
Caetano-Anollés, Kelsey; Caetano-Anollés, Gustavo (2013). Structural Phylogenomics Reveals Gradual Evolutionary Replacement of Abiotic Chemistries by Protein Enzymes in Purine Metabolism PLoS ONE, 8, e59300.
Di Cairano, Loris; Capelli, Riccardo; Bel-Hadj-Aissa, Ghofrane; Pettini, Marco (2022). Topological origin of the protein folding transition Physical Review E, 106, 054134.
Fersht AR. (2000). Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism. Proc Natl Acad Sci U S A, 97, 1525-1529.
Hanczyc, Martin M.; Fujikawa, Shelly M.; Szostak, Jack W. (2003). Experimental Models of Primitive Cellular Compartments: Encapsulation, Growth, and Division Science, 302, 618-622.
Harden, John; Diorio, Nicholas; Petrov, Alexander G.; Jakli, Antal (2009). Chirality of lipids makes fluid lamellar phases piezoelectric Physical Review E, 79, 011701.
Harish, Ajith; Caetano-Anollés, Gustavo (2012). Ribosomal History Reveals Origins of Modern Protein Synthesis PLoS ONE, 7, e32776.
Langemeyer, Lars; Borchers, Ann-Christin; Herrmann, Eric; Füllbrunn, Nadia; Han, Yaping; Perz, Angela; Auffarth, Kathrin; Kümmel, Daniel; Ungermann, Christian (2020). A conserved and regulated mechanism drives endosomal Rab transition eLife, 9, e56090.
Mazzoccoli, Gianluigi (2022). Chronobiology Meets Quantum Biology: A New Paradigm Overlooking the Horizon? Frontiers in Physiology, 13, 892582.
Monsellier E, Chiti F. (2007). Prevention of amyloid-like aggregation as a driving force of protein evolution. EMBO Rep, 8, 737-742.
Omachi, Yuji; Saito, Nen; Furusawa, Chikara (2023). Rare-event sampling analysis uncovers the fitness landscape of the genetic code PLOS Computational Biology, 19, e1011034.
Otero, José Manuel; Cimini, Donatella; Patil, Kiran R.; Poulsen, Simon G.; Olsson, Lisbeth; Nielsen, Jens (2013). Industrial Systems Biology of Saccharomyces cerevisiae Enables Novel Succinic Acid Cell Factory PLoS ONE, 8, e54144.
Patel, Bhavesh H.; Percivalle, Claudia; Ritson, Dougal J.; Duffy, Colm D.; Sutherland, John D. (2015). Common origins of RNA, protein and lipid precursors in a cyanosulfidic protometabolism Nature Chemistry, 7, 301-307.
Pinna, Silvana; Kunz, Cäcilia; Halpern, Aaron; Harrison, Stuart A.; Jordan, Sean F.; Ward, John; Werner, Finn; Lane, Nick (2022). A prebiotic basis for ATP as the universal energy currency PLOS Biology, 20, e3001437.
Powner, Matthew W.; Gerland, Béatrice; Sutherland, John D. (2009). Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions Nature, 459, 239-242.
R Schiller, Martin (2016). The minimotif synthesis hypothesis for the origin of life Journal of Translational Science, 2, 289-296.
Seki, Masayuki (2023). On the origin of the genetic code Genes & Genetic Systems, 98, 9-24.
Tour, James (2016). Animadversions of a Synthetic Chemist Inference: International Review of Science, 2.
Uversky, Vladimir N. (2019). Intrinsically Disordered Proteins and Their “Mysterious” (Meta)Physics Frontiers in Physics, 7, 10.
Weiss, Madeline C.; Preiner, Martina; Xavier, Joana C.; Zimorski, Verena; Martin, William F. (2018). The last universal common ancestor between ancient Earth chemistry and the onset of genetics PLOS Genetics, 14, e1007518.
Wilson, David F.; Matschinsky, Franz M. (2021). Metabolic Homeostasis in Life as We Know It: Its Origin and Thermodynamic Basis Frontiers in Physiology, 12, 658997.
Wimmer, Jessica L. E.; Xavier, Joana C.; Vieira, Andrey d. N.; Pereira, Delfina P. H.; Leidner, Jacqueline; Sousa, Filipa L.; Kleinermanns, Karl; Preiner, Martina; Martin, William F. (2021). Energy at Origins: Favorable Thermodynamics of Biosynthetic Reactions in the Last Universal Common Ancestor (LUCA) Frontiers in Microbiology, 12, 793664.
Paoletti L, Lu Y-J, Schujman GE, de Mendoza D, Rock CO. (2007). Coupling of fatty acid and phospholipid synthesis in Bacillus subtilis. Journal of Bacteriology, 189(16), 5816–5824.
Transcription–translation coupling: direct interactions of RNA polymerase with ribosomes and ribosomal subunits. (2017). Nucleic Acids Research, 45(19), 11043–11055.