Pathway · 22 proteins
Not yet placed in a pathway
Proteins of this group that neither the atlas’s curated pathways nor a KEGG pathway map place yet.
How it works
Each still has a group in the Aquifex reconstruction.
Its proteins
| Protein | EC | Reaction (UniProt) | Metal or cluster | Amino acids | Certainty |
|---|---|---|---|---|---|
| Septum site-determining protein MinD | — | — | — | 278 | System only |
| PNPLA domain-containing protein | — | — | — | 259 | System only |
| Glucanase | 3.2.1.- | Endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. | — | 325 | Step named |
| AAA domain-containing protein | — | — | — | 244 | System only |
| DNA-binding protein HU | — | — | — | 94 | Step named |
| Methylated-DNA--[protein]-cysteine S-methyltransferase | 2.1.1.63 | a 4-O-methyl-thymidine in DNA + L-cysteinyl-[protein] = a thymidine in DNA + S-methyl-L-cysteinyl-[protein] | — | 201 | Step named |
| Pyruvate carboxylase n-terminal domain | — | — | — | 472 | System only |
| AP4A hydrolase | — | — | — | 134 | System only |
| Uncharacterized protein | — | — | — | 246 | System only |
| Probable lipid II flippase MurJ | — | — | — | 499 | Step named |
| DNA helicase | — | — | — | 530 | System only |
| Uncharacterized protein aq_2203 | — | — | — | 212 | Step named |
| 8-oxoguanine DNA glycosylase/AP lyase | 3.2.2.-; 4.2.99.18 | 2'-deoxyribonucleotide-(2'-deoxyribose 5'-phosphate)-2'-deoxyribonucleotide-DNA = a 3'-end 2'-deoxyribonucleotide-(2,3-dehydro-2,3-deoxyribose 5'-phosphate)-DNA + a 5'-end 5'-phospho-2'-deoxyribonucleoside-DNA + H(+) | — | 226 | Step named |
| Glutamate racemase | 5.1.1.3 | L-glutamate = D-glutamate | — | 254 | Step named |
| Ferritin/DPS domain-containing protein | — | — | — | 293 | Step named |
| DNA 5'-3' helicase | 5.6.2.3 | ATP + H2O = ADP + phosphate + H(+) | [4Fe-4S] cluster | 642 | Step named |
| Aspartate 1-decarboxylase | 4.1.1.11 | L-aspartate + H(+) = beta-alanine + CO2 | — | 124 | Step named |
| Enolase | 4.2.1.11 | (2R)-2-phosphoglycerate = phosphoenolpyruvate + H2O | Mg(2+) | 426 | Step named |
| Endonuclease V | 3.1.21.7 | Endonucleolytic cleavage at apurinic or apyrimidinic sites to products with a 5'-phosphate. | Mg(2+) | 222 | Step named |
| DNA repair protein RadA | 3.6.4.- | — | — | 444 | Step named |
| Bifunctional protein GlmU | 2.3.1.157; 2.7.7.23 | alpha-D-glucosamine 1-phosphate + acetyl-CoA = N-acetyl-alpha-D-glucosamine 1-phosphate + CoA + H(+) | Mg(2+) | 464 | Step named |
| Chromosome partition protein Smc | — | — | — | 1156 | Step named |
Origins
Pathway-level origins (discovery history, the prebiotic question, hurdles, and the two panels) are written in phase 3. Until then, see the origins for copying and repairing the genome.
Sources
Other pathways in this group: DNA damage repair · DNA synthesis · Topology management · Joining and end processing · Recombination and restart · Chromosome preparation · Initiation and opening · Homologous recombination · Base excision repair · Cysteine and methionine metabolism